isomiRs (version 1.0.3)

isoNorm: Normalize count matrix

Description

This function normalizes raw count matrix using rlog function from DESeq2-package.

Usage

isoNorm(ids, formula = ~condition)

Arguments

ids

object of class IsomirDataSeq

formula

formula that will be used for normalization

Value

IsomirDataSeq object with the normalized count matrix in a slot. The normalized matrix can be access with counts(ids, norm=TRUE).

Examples

data(mirData)
ids <- isoCounts(mirData, minc=10, mins=6)
ids <- isoNorm(mirData, formula=~condition)
head(counts(ids, norm=TRUE))