lf_structure

a list (its names are used, except if it is a list from <a rd-options="" href="/link/import_tps?package=Momocs&version=1.1.6" data-mini-rdoc="Momocs::import_tps">import_tps</a>
in this case <code>names(lf$coo)</code> is used) of a list of filenames, as characters, typically such as
those obtained with <a rd-options="" href="/link/list.files?package=Momocs&version=1.1.6" data-mini-rdoc="Momocs::list.files">list.files</a>. Alternatively, a path to a folder
containing the files. Actually, if lf is of length 1 (a single character),
the function assumes it is a path and do a <a rd-options="" href="/link/list.files?package=Momocs&version=1.1.6" data-mini-rdoc="Momocs::list.files">list.files</a> on it.

the names of the groups, as a vector of characters which length corresponds
to the number of groups.

names

character, the spliting factor used for the file names.

split

logical. Whether to remove the last for characters in
filenames, typically their extension, e.g. &#39;.jpg&#39;.

trim.extension

If filenames are consistently named with the same character serating factors,
and with every individual including its belonging levels, e.g.:
<ul>
<li> <code>001_speciesI_siteA_ind1_dorsalview</code>
</li>
<li> <code>002_speciesI_siteA_ind2_lateralview</code> </li>
</ul>
 etc., this function returns a <a rd-options="" href="/link/data.frame?package=Momocs&version=1.1.6" data-mini-rdoc="Momocs::data.frame">data.frame</a>
from it that can be passed to <a rd-options="" href="/link/Out?package=Momocs&version=1.1.6" data-mini-rdoc="Momocs::Out">Out</a>, Opn, Ldk objects.

A complete toolkit for morphometrics, from data
extraction to multivariate analyses. Most common 2D
morphometrics approaches are included: outlines, open
outlines, configurations of landmarks, traditional
morphometrics, and facilities for data preparation,
manipulation and visualization with a consistent grammar
throughout. Momocs allows reproducible, complex
morphometric analyses, paves the way for a pure
open-source workflow in R, and other morphometrics
approaches should be easy to plug in, or develop from, on
top of this canvas.

Vincent Bonhomme

Momocs

Morphometrics using R

Julien Claude

lf_structure function

a list (its names are used, except if it is a list from <a rd-options='' href='import_tps'>import_tps</a>
in this case <code>names(lf$coo)</code> is used) of a list of filenames, as characters, typically such as
those obtained with <a rd-options='' href='list.files'>list.files</a>. Alternatively, a path to a folder
containing the files. Actually, if lf is of length 1 (a single character),
the function assumes it is a path and do a <a rd-options='' href='list.files'>list.files</a> on it.

If filenames are consistently named with the same character serating factors,
and with every individual including its belonging levels, e.g.:
<ul>
<li> <code>001_speciesI_siteA_ind1_dorsalview</code>
</li>
<li> <code>002_speciesI_siteA_ind2_lateralview</code> </li>
</ul>
 etc., this function returns a <a rd-options='' href='data.frame'>data.frame</a>
from it that can be passed to <a rd-options='' href='Out'>Out</a>, Opn, Ldk objects.

lf_structure: Extracts structure from filenames

Description

Usage

Arguments

Value

Details

See Also