logLik

logLik.libbi

The method <code>logLik</code> extracts the log-likelihood of a <code>libbi</code>
 object. This can be done, for example, after a call to
 <code>sample</code> to inspect the chain log-likelihoods.
For the help page of the base R <code>logLik</code> function, see
 <code><a href="/link/logLik?package=rbi&version=1.0.0" data-mini-rdoc="rbi::logLik">logLik</a></code>.

Provides a complete interface to 'LibBi', a library for Bayesian
inference (see <https://libbi.org> and Murray, 2015
<doi:10.18637/jss.v067.i10> for more information). This includes functions
for manipulating 'LibBi' models, for reading and writing 'LibBi'
input/output files, for converting 'LibBi' output to provide traces for use
with the coda package, and for running 'LibBi' to conduct inference.

Sebastian Funk

Interface to 'LibBi'

Pierre E. Jacob

Anthony Lee

Lawrence M. Murray

Sam Abbott

logLik function

<dl><dt>object</dt>
<dd>a <code>libbi</code> object</dd>
<dt>...</dt>
<dd>options to be passed to <code>run.libbi</code></dd></dl>

Arguments

The method <code>logLik</code> extracts the log-likelihood of a <code>libbi</code>
 object. This can be done, for example, after a call to
 <code>sample</code> to inspect the chain log-likelihoods.
For the help page of the base R <code>logLik</code> function, see
 <code><a href='https://rdrr.io/r/stats/logLik.html'>logLik</a></code>.

Using the LibBi wrapper to logLik — logLik

<dl>

<dt>object</dt>
<dd>a <code>libbi</code> object</dd>


<dt>...</dt>
<dd>options to be passed to <code>run.libbi</code></dd>

</dl>

logLik: Using the LibBi wrapper to logLik

Description

Usage

Value

Arguments