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MANOR (version 1.44.0)

CGH Micro-Array NORmalization

Description

Importation, normalization, visualization, and quality control functions to correct identified sources of variability in array-CGH experiments.

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Version

Version

1.44.0

License

GPL-2

Maintainer

Pierre Neuvial

Last Published

February 15th, 2017

Functions in MANOR (1.44.0)

flag.arrayCGH

Apply a flag to an arrayCGH
flag.summary

Summarize information about flags after array normalization
detectSB

Spatial bias detection
to.flag

Create an object of type flag
import

Import raw file to an arrayCGH object
spatial

Examples of array-CGH data with spatial artifacts
qscore.arrayCGH

arrayCGH quality score
html.report

Generate an HTML report of array normalization
qscore

Create an object of type qscore
genome.plot

Pan-genomic representation of a normalized arrayCGH
norm

Normalize an object of type arrayCGH
arrayTrend

Spatial trend of microarray spots statistic
qscore.summary

Compute quality scores for a given arrayCGH object
nem

Spatial Classification by EM algorithm
flags

Examples of flag objects to apply to CGH arrays
report.plot

Array image and a genomic representation of a normalized arrayCGH
sort

Sorting for normalized arrayCGH objects
qscores

Examples of qscore objects (quality scores) to apply to CGH arrays
MANOR-internal

Internal Functions for MANOR Package