PICS(segReadsList,dataType=NULL, paraEM=NULL, paraPrior=NULL, nCores=1)
setParaEm
function. The default parameters should be good enough for most usages.setParaPrior
function. The default parameters should be good enough for most usages.integer
. The number of cores that should be used in parallel by the function.signature(x = ``pics'')
: return the error code for each list element (i.e. candidate region) of a PICS object. If the string is empty, there were no errors.signature(x = ``pics'')
: Plot all regions in the PICS object. This might be long, and should only be used to plot a few regions, so subset the object before plotting.signature(x = ``pics'')
: return the variance parameter of the reverse (R) distribution for each binding event.signature(x = ``pics'')
: return the variance parameter of the forward (F) distribution for each binding event.signature(x = ``pics'')
: return the score for each binding event.signature(x = ``pics'')
: return the score of the forward (F) for each binding event.signature(x = ``pics'')
: return the score of the forward (R) for each binding event.signature(x = ``pics'')
: return the range maximum.signature(x = ``pics'')
: return the range minimal.signature(x = ``pics'')
: subset PICS object.signature(x = ``pics'')
: return the density for each binding event.pics