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gMCP (version 0.8-17)

Graph Based Multiple Comparison Procedures

Description

Functions and a graphical user interface for graphical described multiple test procedures.

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Install

install.packages('gMCP')

Monthly Downloads

848

Version

0.8-17

License

GPL (>= 2)

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Last Published

March 25th, 2024

Functions in gMCP (0.8-17)

generateWeights

generateWeights
gMCPResult-class

Class gMCPResult
generateBounds

generateBounds
generatePvals

generatePvals
gMCPReport

Automatic Generation of gMCP Reports
gMCP-package

Graphical described Multiple Comparison Procedures
getJavaInfo

Get Memory and Runtime Info from JVM
parametric.test

Weighted parametric test
gMCP.extended

Graph based Multiple Comparison Procedures
gMCP

Graph based Multiple Comparison Procedures
joinGraphs

Joins two graphMCP objects
gPADInterim-class

Class gPADInterim
graph2latex

Graph2LaTeX
matrix2graph

Matrix2Graph and Graph2Matrix
graphMCP-class

Class graphMCP
generateTest

generateTest
graphGUI

Graphical User Interface for graphical described multiple comparison procedures
sampSizeCore

Function for sample size calculation
sampSize

Sample size calculations
weighted.test.functions

Weighted Test Functions for use with gMCP
graphAnalysis

Analysis of a gMCP-Graph
hydroquinone

Hydroquinone Mutagenicity Assay
replaceVariables

Replaces variables in a general graph with specified numeric values
rejectNode

Rejects a node/hypothesis and updates the graph accordingly.
graphTest

Multiple testing using graphs
placeNodes

Placement of graph nodes
rqmvnorm

Random sample from the multivariate normal distribution
simes.test

Weighted Simes test
simes.on.subsets.test

Simes on subsets, otherwise Bonferroni
secondStageTest

EXPERIMENTAL: Construct a valid level alpha test for the second stage of an adaptive design that is based on a pre-planned graphical MCP
unitTestsGMCP

Run the R unit (and optional the JUnit) test suite for gMCP
plotSimCI

Plot confidence intervals
substituteEps

Substitute Epsilon
simvastatin

Simvastatin and Colesevelam Treatment in Patients with Primary Hypercholesterolemia
subgraph

Get a subgraph
bdiagNA

Create a Block Diagonal Matrix with NA outside the diagonal
bonferroni.test

Weighted Bonferroni-test
entangledMCP-class

Class entangledMCP
bonferroni.trimmed.simes.test

Trimmed Simes test for intersections of two hypotheses and otherwise weighted Bonferroni-test
calcPower

Calculate power values
extractPower

Calculate power values
doInterim

EXPERIMENTAL: Evaluate conditional errors at interim for a pre-planned graphical procedure
exampleGraphs

Functions that create different example graphs
simConfint

Simultaneous confidence intervals for sequentially rejective multiple test procedures
corMatWizard

Graphical User Interface for the creation of correlation matrices