sangerseqR (version 1.8.2)

primarySeqID: Sangerseq Accessor Functions

Description

Accessor Functions allow the user to retrieve results from and assign values to sangerseq-class objects.

Usage

primarySeqID(obj)
primarySeqID(obj) <- value
primarySeq(obj, string = FALSE)
primarySeq(obj) <- value
secondarySeqID(obj)
secondarySeqID(obj) <- value
secondarySeq(obj, string = FALSE)
secondarySeq(obj) <- value
traceMatrix(obj)
traceMatrix(obj) <- value
peakPosMatrix(obj)
peakPosMatrix(obj) <- value
peakAmpMatrix(obj)
peakAmpMatrix(obj) <- value
## S3 method for class 'sangerseq':
primarySeq(obj, string = FALSE)
## S3 method for class 'sangerseq':
secondarySeq(obj, string = FALSE)
## S3 method for class 'sangerseq':
traceMatrix(obj)
## S3 method for class 'sangerseq':
peakPosMatrix(obj)
## S3 method for class 'sangerseq':
peakAmpMatrix(obj)
## S3 method for class 'sangerseq':
primarySeqID(obj)
## S3 method for class 'sangerseq':
secondarySeqID(obj)
## S3 method for class 'sangerseq':
primarySeq(obj) <- value
## S3 method for class 'sangerseq':
secondarySeq(obj) <- value
## S3 method for class 'sangerseq':
traceMatrix(obj) <- value
## S3 method for class 'sangerseq':
peakPosMatrix(obj) <- value
## S3 method for class 'sangerseq':
peakAmpMatrix(obj) <- value
## S3 method for class 'sangerseq':
primarySeqID(obj) <- value
## S3 method for class 'sangerseq':
secondarySeqID(obj) <- value

Arguments

obj

sangerseq object to be manipulated

value

The value to set the slot to.

string

TRUE/FALSE. FALSE (default) returns a DNAString class object. TRUE returns the DNA sequence as a character string.

See Also

sangerseq-class

Examples

hetsangerseq <- readsangerseq(system.file("extdata",
                                          "heterozygous.ab1",
                                          package = "sangerseqR"))
primarySeq(hetsangerseq)
secondarySeq(hetsangerseq, string=TRUE)
primarySeqID(hetsangerseq)
primarySeqID(hetsangerseq) <- "Some string"
primarySeqID(hetsangerseq)