topSpliceDGE(lrt, test="Simes", number=10, FDR=1)
DGELRT
object produced by diffSpliceDGE
."Simes"
, "gene"
or "exon"
.
"exon"
gives exon-level tests for each exon.
"gene"
gives gene-level tests for each gene.
"Simes"
gives genewise p-values derived from the exon-level tests after Simes adjustment for each gene.lrt
plus the following columnstest="Simes"
or "gene"
test="exon"
test="exon"
)test="exon"
and the object for diffSpliceDGE
was produced by glmFit
)test="exon"
and the object for diffSpliceDGE
was produced by glmQLFit
)test="gene"
and the object for diffSpliceDGE
was produced by glmFit
)test="gene"
and the object for diffSpliceDGE
was produced by glmQLFit
)diffSpliceDGE
.