Arothron (version 2.0.5)

localmeshdiff: localmeshdiff Calculate and Visualize local differences between two meshes

Description

localmeshdiff Calculate and Visualize local differences between two meshes

Usage

localmeshdiff(
  mesh1,
  mesh2,
  ploton = 1,
  diffarea = ((area_shape1 - area_shape2)/area_shape2) * 100,
  paltot = rainbow(200),
  from = NULL,
  to = NULL,
  n.int = 200,
  out.rem = TRUE,
  fact = 1.5,
  visual = 1,
  scale01 = TRUE,
  colwire = "pink"
)

Value

vect numeric vector containing local differeces in area between the reference and the target mesh

Arguments

mesh1

reference mesh: object of class "mesh3d"

mesh2

target mesh: object of class "mesh3d"

ploton

numeric: define which mesh will be used to visualize local differences

diffarea

formula: define how calculating differences in area. area_shape1 refers to mesh1, area_shape2 refers to mesh2

paltot

character vector: specify the colors which are used to create a color palette

from

numeric: minimum distance to be colorised

to

numeric: maximum distance to be colorised

n.int

numeric: determines break points for color palette

out.rem

logical: if TRUE outliers will be removed

fact

numeric: factor k of the interquartile range

visual

numeric: if equals to 1 the mesh is plotted without a wireframe, if set on 2 a wireframe is added

scale01

logical: if TRUE the vector of distances is scaled from 0 to 1

colwire

character: color of the wireframe

Author

Antonio Profico, Costantino Buzi, Silvia Castiglione, Marina Melchionna, Paolo Piras, Pasquale Raia, Alessio Veneziano

References

Melchionna, M., Profico, A., Castiglione, S., Sansalone, G., Serio, C., Mondanaro, A., ... & Manzi, G. (2020). From smart apes to human brain boxes. A uniquely derived brain shape in late hominins clade. Frontiers in Earth Science, 8, 273.

Examples

if (FALSE) {
library(Arothron)
library(rgl)
data("primendoR")
neaset<-primendoR$sets[,,11]
sapset<-primendoR$sets[,,14]
#defining a mesh for the neanderthal right hemisphere
neasur<-list("vb"=t(cbind(neaset,1)),"it"=primendoR$sur$it)
class(neasur)<-"mesh3d"
#defining a mesh for the modern human right hemisphere
sapsur<-list("vb"=t(cbind(sapset,1)),"it"=primendoR$sur$it)
class(neasur)<-"mesh3d"
layout3d(t(c(1,2)),sharedMouse = TRUE)
localmeshdiff(sapsur,neasur,1,scale01 = TRUE,
paltot=c("darkred","red","orange","white","lightblue","blue","darkblue"))
next3d()
localmeshdiff(neasur,sapsur,1,scale01 = TRUE,
paltot=c("darkred","red","orange","white","lightblue","blue","darkblue"))
}