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Arothron

Tools for Geometric Morphometrics and Virtual Anthropology. The package includes tools of Virtual Anthropology to build virtual cavities as endocasts, to align two disarticulated models belonging to the same specimen, and functions to import and export format files into another format.

To install the Development version (beta) of Arothron R-package from Github using devtools:

install.packages("devtools")
devtools::install_github("Arothron/Arothron",local=FALSE)

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Version

Install

install.packages('Arothron')

Monthly Downloads

428

Version

2.0.5

License

GPL-2

Maintainer

Antonio Profico

Last Published

February 1st, 2023

Functions in Arothron (2.0.5)

SM_set

example dataset
compare_check.set

compare_check.set
dta

dta
ext.mesh.rai

ext.mesh.rai
PCscoresCorr

PCscoresCorr Perform a correlation test between two matrices of PCscores
grid_pov

grid_pov
RMs_sets

example dataset
export_amira

export_amira
endomaker_dir

endomaker_dir
ext.int.mesh

ext.int.mesh
human_skull

example dataset
krd1_tooth

example dataset
patches_frm2amira

patches_frm2amira
image2palettes

image2palettes
export_amira.path

export_amira.path
landmark_frm2amira

landmark_frm2amira
permutangle

permutangle
endomaker

endomaker
femsets

example dataset
endo_set

example dataset
out.inn.mesh

out.inn.mesh
noise.mesh

noise.mesh
localmeshdiff

localmeshdiff Calculate and Visualize local differences between two meshes
malleus_bone

example dataset
pov_selecter

pov_selecter
read.amira.dir

read.amira.dir
read.amira.set

read.amira.set
primendoR

example dataset
yoda_set

example dataset
read.path.amira

read.path.amira
repmat

repmat
yoda_sur

example dataset
listtoarray

listtoarray convert a list into an array
spherical.flipping

spherical.flipping
sinus_set

example dataset
volendo

volendo
twodviews

twodviews Combine and calculate the PCscores matrix from a list of different landmark configurations to be combined
twodvarshape

twodvarshape Calculates the shape variation associated to a value of PC scores associated to a specific combined landmark configuration or view
trasf.mesh

trasf.mesh
Altapic

example dataset
CScorreffect

CScorreffect Plot showing the correlation in the shape space between original and combined dataset omitting or including the normalization factors calculated with Arothron and MLECScorrection
Arothron-package

eometric Morphometric Methods and Virtual Anthropology Tools
bary.mesh

bary.mesh
MLECScorrection

MLECScorrection Maximum Likelihood Estimation of the normalization factor to be applied to optimize the correlation between two landmark configurations to be combined by using twodviews and
DM_face_sur

example dataset
Lset3D_array

example dataset
DM_base_sur

example dataset
Lset2D_list

example dataset
DM_set

example dataset
MAs_sets

example dataset
dec.curve

dec.curve
SCP1.mesh

example dataset
aro.clo.points

aro.clo.points
arraytolist

arraytolist