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AssotesteR (version 0.1-10)

Statistical Tests for Genetic Association Studies

Description

R package with statistical tests and methods for genetic association studies with emphasis on rare variants and binary (dichotomous) traits

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Version

Install

install.packages('AssotesteR')

Monthly Downloads

48

Version

0.1-10

License

GPL (>= 3)

Maintainer

Gaston Sanchez

Last Published

December 18th, 2013

Functions in AssotesteR (0.1-10)

CMAT

CMAT: Cumulative Minor Allele Test
BST

BST: Bayesian Score Test
SEQSUM

SEQSUM: Sequential Sum Score Test
VT

VT: Variable Threshold
ASCORE

ASCORE: Adaptive Score Test
SKAT

SKAT: Sequence Kernel Association Test
RBT

RBT: Replication Based Test
TTEST

TTEST: Hotelling T2 Test
WST

WST: Weighted Score Test
SSUW

SSUW: Weighted Sum of Squared Score U Statistic
ORWSS

ORWSS: Odds Ratio Weighted Sum Statistic
AssotesteR-internal

Internal AssotesteR objects
UMINP

UMINP: Univariate minP (minimum p-value)
CMC

CMC: Combined Multivariate and Collapsing Method
ASSUW

ASSUW: Adaptive Sum of Squared Score U Statistic
ASSU

ASSU: Adaptive Sum of Squared Score U Statistic
AssotesteR-package

Statistical Tests for Genetic Association Studies
CAST

CAST: Cohort Allelic Sums Test
SUM

SUM: Sum Test
RVT1

RVT1: Rare Variant Test 1 for dichotomous traits
CARV

CARV: Comprehrensive Approach to Analyzing Rare Variants
MULTI

MULTI: Multiple Tests
GDBR

GDBR: Genomic Distance-Based Regression
SSU

SSU: Sum of Squared Score U Statistic
SCORE

SCORE: Score Test (from Logistic Regression)
CALPHA

CALPHA: C-alpha Score Test
RWAS

RWAS: Rare-Variant Weighted Aggregate Statistic
RARECOVER

RARECOVER Algorithm
WSS

WSS: Weighted Sum Statistic
genodata

genodata
ASUM

ASUM: Adaptive Sum Statistic
RVT2

RVT2: Rare Variant Test 2 for dichotomous traits