Rdocumentation
powered by
Learn R Programming
BAMBI (version 2.3.5)
Bivariate Angular Mixture Models
Description
Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions. Chakraborty and Wong (2021)
.
Copy Link
Link to current version
Version
Version
2.3.5
2.3.4
2.3.3
2.3.2
2.3.1
2.3.0
2.2.0
2.1.0
2.0.1
2.0.0
1.2.1
1.1.1
1.1.0
1.0.1
1.0.0
Install
install.packages('BAMBI')
Monthly Downloads
896
Version
2.3.5
License
GPL-3
Maintainer
Saptarshi Chakraborty
Last Published
March 8th, 2023
Functions in BAMBI (2.3.5)
Search all functions
as.mcmc.list.angmcmc
Create an mcmc.list object from an angmcmc object
bridge_sampler.angmcmc
Log Marginal Likelihood via Bridge Sampling for angmcmc objects
bestmodel
Convenience function for extracting angmcmc object, and the value of the model selection criterion corresponding to the best fitted model in stepwise fits
contour_model
Contourplot for bivariate angular mixture model densities
fit_wnormmix
Fitting univariate wrapped normal mixtures using MCMC
fit_vmmix
Fitting univariate von Mises mixtures using MCMC
d_fitted
Density and random deviates from an angmcmc object
fit_vmsinmix
Fitting bivariate von Mises sine model mixtures using MCMC
extractsamples
Extract MCMC samples for parameters from an angmcmc object
fit_vmcosmix
Fitting bivariate von Mises cosine model mixtures using MCMC
fit_wnorm2mix
Fitting bivariate wrapped normal model mixtures using MCMC
fit_incremental_angmix
Stepwise fitting of angular mixture models with incremental component sizes and optimum model selection
paramtrace
Trace plot for parameters from an angmcmc object
quantile.angmcmc
Quantile estimates for parameters from an angmcmc object
fit_angmix
Fitting Bivariate and univariate angular mixture models
is.angmcmc
Angular MCMC (
angmcmc
) Object
plot.angmcmc
Summary plots for angmcmc objects
pointest
Point estimates for parameters from an angmcmc object
latent_allocation
Finding latent allocation (component indicators) from an angmcmc object
fix_label
Fix label switching in angmcmc objects
rvmmix
The univariate von Mises mixtures
rwnormmix
The univariate Wrapped Normal mixtures
rvmcosmix
The bivariate von Mises cosine model mixtures
logLik.angmcmc
Extract Log-Likelihood from angmcmc objects
lpdtrace
Trace and autocorrelation plots of log posterior density or log likelihood from an angmcmc object
rvmsin
The bivariate von Mises sine model
loo.angmcmc
Leave-one-out cross-validation (LOO) for angmcmc objects
densityplot.angmcmc
Density plots for angmcmc objects
rwnorm2mix
The bivariate Wrapped Normal mixtures
vm2_mle
Maximum likelihood estimation of bivariate von Mises parameters
rwnorm
The univariate Wrapped Normal distribution
rwnorm2
The bivariate Wrapped Normal distribution
zero_to_2pi
Wrap angles into
[-pi, pi]
or
[0, 2*pi]
wind
Saturna Island wind directions
rvmsinmix
The bivariate von Mises sine model mixtures
rvm
The univariate von Mises distribution
rvmcos
The bivariate von Mises cosine model
tim8
Backbone Dihedral Angles of Triose Phosphate Isomerase (8TIM)
waic.angmcmc
Watanabe-Akaike Information Criterion (WAIC) for angmcmc objects
surface_model
Surface for bivariate angular mixture model densities
select_chains
Select chains from angmcmc objects
summary.angmcmc
Summary statistics for parameters from an angmcmc object
circ_cor
Sample circular correlation coefficients
circ_varcor_model
Analytic circular variances and correlations for bivariate angular models
add_burnin_thin
Add (extra) burnin and thin to angmcmc object after original run
BAMBI
BAMBI
: An R package for Bivariate Angular Mixture Models
DIC
Deviance Information Criterion (DIC) for angmcmc objects
contour.angmcmc
Contour plot for angmcmc objects with bivariate data