plotFreq

If all these arguments are set to the default NULL, <code>plotFreq</code> will plot all the graphs (auctocorrelation, density, running mean and trace). To plot only one, two or three graphs, set one, two or three of these arguments as TRUE.

acf,d,rmean,tr


 Displays plots of the autocorrelation function, the running mean, the density functions and the trace histories for the parameter(s) in the MCMC sequence. This function is suitable to plot objects of class <code>freq</code>.


The package BayHap performs simultaneous estimation of
uncertain haplotype frequencies and association with haplotypes
based on generalized linear models for quantitative, binary and
survival traits. Bayesian statistics and Markov Chain Monte
Carlo techniques are the theoretical framework for the methods
of estimation included in this package. Prior values for model
parameters can be included by the user. Convergence diagnostics
and statistical and graphical analysis of the sampling output
can be also carried out.

plotFreq: Plot acf, running mean, density functions and trace histories

Description

Usage

Arguments

Value

Details

See Also