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BioSeqClass (version 1.30.0)

Classification for Biological Sequences

Description

Extracting Features from Biological Sequences and Building Classification Model

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Version

Version

1.30.0

License

LGPL (>= 2.0)

Maintainer

Li Hong

Last Published

February 15th, 2017

Functions in BioSeqClass (1.30.0)

featureCKSAAP

Feature Coding by k-spaced Aminoacids/Base Pairs
basic

Assistant Functions
featureDIPRODB

Feature Coding by Dinucleotide Property
featurePseudoAAComp

Feature Coding by Pseudo Amino Acid Composiion
featureEvaluate

Evaluate Different Feature Coding Schemas
featurePSSM

Feature Coding
featureDOMAIN

Feature Coding by doamin organization
performance

Performance Evaluation
featureAAindex

Feature Coding by physicochemical/biochemical properties in AAindex
featureBDNAVIDEO

Feature Coding by DNA/RNA property
classify

Classification with Specific Features and Cross-Validation
selectWeka

Feature Selection by Weka
model

Classification Models
selectFFS

feature forward selection
featureCTD

Feature Coding by composition, transition and distribution
featureBinary

Feature Coding by Binary Vectors
featureSSC

Feature Coding by secondary structure
featureGapPairComposition

Feature Coding by g-spaced aminoacids/bases pairs
featureHydro

Feature Coding by hydrophobicity
hr

Homolog Reduction
featureFragmentComposition

Feature Coding by the composition of k-mer fragments
zzz

Load packages and data