BioSeqClass (version 1.30.0)

featureBDNAVIDEO: Feature Coding by DNA/RNA property

Description

DNA/RNA Sequences are coded with DNA or RNA property from B-DNA-VIDEO database.

Usage

featureBDNAVIDEO(seq)

Arguments

seq

a string vector for the protein, DNA, or RNA sequences.

Details

featureBDNAVIDEO returns a matrix with 38 columns. Each column is the mean of DNA or RNA property from B-DNA-VIDEO database (http://wwwmgs.bionet.nsc.ru/mgs/systems/bdnavideo/).

Examples

if(interactive()){
  file = file.path(path.package("BioSeqClass"), "example", "test.rna")    
  rna = as.matrix(read.csv(file,header=F,sep="\t"))[,1]
  
  BDNAVIDEO = featureBDNAVIDEO(rna)
}