BitSeq-package

BitSeq


The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process.
   
In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments.<p></p><p>The second stage of BitSeq embraces the differential expression analysis of transcript expression.
Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.
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 package

The BitSeq package is targeted for transcript expression
analysis and differential expression analysis of RNA-seq data
in two stage process. In the first stage it uses Bayesian
inference methodology to infer expression of individual
transcripts from individual RNA-seq experiments. The second
stage of BitSeq embraces the differential expression analysis
of transcript expression. Providing expression estimates from
replicates of multiple conditions, Log-Normal model of the
estimates is used for inferring the condition mean transcript
expression and ranking the transcripts based on the likelihood
of differential expression.

Antti Honkela

Transcript expression inference and differential expression
analysis for RNA-seq data

BitSeq-package function

The BitSeq package is targeted for transcript expression analysis and differential expression analysis of RNA-seq data in two stage process.
   
In the first stage it uses Bayesian inference methodology to infer expression of individual transcripts from individual RNA-seq experiments.

The second stage of BitSeq embraces the differential expression analysis of transcript expression.
Providing expression estimates from replicates of multiple conditions, Log-Normal model of the estimates is used for inferring the condition mean transcript expression and ranking the transcripts based on the likelihood of differential expression.

BitSeq-package: Bayesian Inference of Transcripts from Sequencing data

Description

Arguments

References