loadSamples

writeSamples

Name of the file with samples or to which the samples are written.

fileName

DataFrame with samples written to the file.

data

Transcript information file which can be used to name the rows.

trInfoFile

Functions for loading expression samples into DataFrame and saving samples from DataFrame into a file.

transcript expression

The BitSeq package is targeted for transcript expression
analysis and differential expression analysis of RNA-seq data
in two stage process. In the first stage it uses Bayesian
inference methodology to infer expression of individual
transcripts from individual RNA-seq experiments. The second
stage of BitSeq embraces the differential expression analysis
of transcript expression. Providing expression estimates from
replicates of multiple conditions, Log-Normal model of the
estimates is used for inferring the condition mean transcript
expression and ranking the transcripts based on the likelihood
of differential expression.

loadSamples: Loading and saving expression samples

Description

Usage

Arguments

Value

Details

See Also