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CGHcall (version 2.34.0)

Calling aberrations for array CGH tumor profiles.

Description

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

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Version

Version

2.34.0

License

GPL (http://www.gnu.org/copyleft/gpl.html)

Maintainer

Mark de Wiel

Last Published

February 15th, 2017

Functions in CGHcall (2.34.0)

Wilting

Cervical cancer arrayCGH data
ExpandCGHcall

Expands result fron CGHcall to CGHcall object.
CGHcall-package

Calling aberrations for array CGH tumor profiles.
segmentData

Breakpoint detection for arrayCGH data.
normalize

Normalization and cellularity adjustment for arrayCGH data.
CGHcall

Calling aberrations for array CGH tumor profiles.
postsegnormalize

Post-segmentation normalization
preprocess

Preprocess arrayCGH data