Wilting


  A dataframe containing 4709 rows and 8 columns with arrayCGH data.


datasets

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Mark de Wiel

CGHcall

Calling aberrations for array CGH tumor profiles.

Wilting function

A dataframe containing the following 8 columns: <dl>
    <dt>Name</dt><dd>The unique identifiers of array elements.</dd> <dt>Chromosome</dt><dd>Chromosome number of each array element.</dd> <dt>Position</dt><dd>Chromosomal position in bp of each array element.</dd> <dt>AdCA10</dt><dd>Raw log2 ratios for cervical cancer sample AdCA10.</dd> <dt>SCC27</dt><dd>Raw log2 ratios for cervical cancer sample SCC27.</dd> <dt>SCC32</dt><dd>Raw log2 ratios for cervical cancer sample SCC32.</dd> <dt>SCC36</dt><dd>Raw log2 ratios for cervical cancer sample SCC36.</dd> <dt>SCC39</dt><dd>Raw log2 ratios for cervical cancer sample SCC39.</dd> </dl> 

Format

Wilting, S.M., Snijders, P.J., Meijer, G.A., Ylstra, B., van den IJssel, P.R., Snijders, A.M., Albertson, D.G., Coffa, J., Schouten, J.P., van de Wiel, M.A., Meijer, C.J., & Steenbergen, R.D. (2006). Increased gene copy numbers at chromosome 20q are frequent in both squamous cell carcinomas and adenocarcinomas of the cervix. <em>Journal of Pathology, 210</em>, 258-259.

Source

A dataframe containing 4709 rows and 8 columns with arrayCGH data.

Wilting: Cervical cancer arrayCGH data

Description

Usage

Arguments

Format

Source