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CGHnormaliter (version 1.26.0)

Normalization of array CGH data with imbalanced aberrations.

Description

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

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Version

Version

1.26.0

License

GPL (>= 3)

Maintainer

Bart PP van Houte

Last Published

February 15th, 2017

Functions in CGHnormaliter (1.26.0)

CGHnormaliter.write.table

Print normalized aCGH data to a file
CGHnormaliter-internal

Internal CGHnormaliter functions
CGHnormaliter-package

This package implements the CGHnormaliter algorithm which is a strategy for improved normalization of array Comparative Genomic Hybridization (aCGH) data
Leukemia

Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans
CGHnormaliter

Iterative normalization of aCGH data