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ChIPComp (version 1.2.0)

Quantitative comparison of multiple ChIP-seq datasets

Description

ChIPComp detects differentially bound sharp binding sites across multiple conditions considering matching control.

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Version

Version

1.2.0

License

GPL

Maintainer

Li Chen

Last Published

February 15th, 2017

Functions in ChIPComp (1.2.0)

seqData

A ChIPComp object.
makeCountSet

make differential binding sites data frame
makeConf

make configurations for experimental design written in csv sheet
plot.ChIPComp

plot correlation between log ChIP read counts and smoothing control counts in common binding sites.
print.ChIPComp

Print top ranked differential binding sites
ChIPComp

Perform hypothesis testing to detect differential binding sites
ChIPComp-package

Detect differential binding sites for ChIP sequencing data