makeConf


  	A csv sheet represents ChIP experiments design. 
  	It contains 6 columns,<code>sampleID</code>,<code>condition</code>,<code>factor</code>,<code>ipReads</code>,<code>ctReads</code>,<code>peaks</code>.
  	<code>condition</code> refers to treatment condition or cell line; 
  	<code>factor</code> refers to transcription factor or histone modification; 
  	<code>ipReads</code> is the ChIP sequence data in bam or bed format; 
  	<code>ctReads</code> is the control sequence data in bam or bed format; 
  	<code>peaks</code> is the called peaks from existing peak-calling software.
  

sampleSheet


	 Make a list with two elements. 
	 The first element is a data frame containing two group comparison study information.
	 The second element is the design matrix.


ChIPComp detects differentially bound sharp binding sites
across multiple conditions considering matching control.

Li Chen

ChIPComp

Quantitative comparison of multiple ChIP-seq datasets

makeConf function

A csv sheet represents ChIP experiments design. 
  	It contains 6 columns,<code>sampleID</code>,<code>condition</code>,<code>factor</code>,<code>ipReads</code>,<code>ctReads</code>,<code>peaks</code>.
  	<code>condition</code> refers to treatment condition or cell line; 
  	<code>factor</code> refers to transcription factor or histone modification; 
  	<code>ipReads</code> is the ChIP sequence data in bam or bed format; 
  	<code>ctReads</code> is the control sequence data in bam or bed format; 
  	<code>peaks</code> is the called peaks from existing peak-calling software.

Make a list with two elements. 
	 The first element is a data frame containing two group comparison study information.
	 The second element is the design matrix.

makeConf: make configurations for experimental design written in csv sheet

Description

Usage

Arguments

Value

Examples