Learn R Programming

DBChIP (version 1.16.0)

Differential Binding of Transcription Factor with ChIP-seq

Description

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Copy Link

Version

Version

1.16.0

License

GPL (>= 2)

Maintainer

Kun Liang

Last Published

February 15th, 2017

Functions in DBChIP (1.16.0)

conds

conds
test.diff.binding

Test for differential binding
report.peak

Report peaks
plotPeak

Plot peak
read.binding.site.list

read.binding.site.list
chip.data.list

ChIP data of transcription factor PHA-4/FOXA in C.elegans
PHA4

ChIP-seq data of transcription factor PHA-4/FOXA in C.elegans
DBChIP

DBChIP
binding.site.list

Binding site predictions
site.merge

Cluster close-by sites into consensus sites
input.data.list

Control/input data of transcription factor PHA-4/FOXA in C.elegans
DBChIP-package

DBChIP-package
load.data

load.data
get.site.count

Get site count