plotSimulation

Function <code>plotSimulation</code> displays sample means of data simulated under a random-effects mixture model. Each plot corresponds to a cluster. May need to partition the plotting area to display all in one plot.

A Bayesian clustering method for replicated time series or replicated measurements from multiple experimental conditions, e.g., time-course gene expression data. It estimates the number of clusters directly from the data using a Dirichlet-process prior. See Fu, A. Q., Russell, S., Bray, S. and Tavare, S. (2013) Bayesian clustering of replicated time-course gene expression data with weak signals. The Annals of Applied Statistics. 7(3) 1334-1361. <doi:10.1214/13-AOAS650>.

Audrey Q Fu

DIRECT

Bayesian Clustering of Multivariate Data Under the
Dirichlet-Process Prior

plotSimulation function

<dl> <dt>simudata</dt>
<dd>List produced by <code>simuDataREM</code>. Contains simulated data.</dd> <dt>times</dt>
<dd>Vector of length <code>ntime</code> indicating at which time points data are simulated.</dd> <dt>nsize</dt>
<dd>An integer vector containing sizes of simulated clusters.</dd> <dt>ntime</dt>
<dd>Number of time points.</dd> <dt>nrep</dt>
<dd>Number of replicates.</dd> <dt>skip</dt>
<dd>Not for use.</dd> <dt>...</dt>
<dd>Addition arguments for <code>plot</code>.</dd></dl>

Arguments

Author

Plotting Data Simulated Under A Random-Effects Mixture Model — plotSimulation

<dl>

 <dt>simudata</dt>
<dd>List produced by <code>simuDataREM</code>. Contains simulated data.</dd>

 <dt>times</dt>
<dd>Vector of length <code>ntime</code> indicating at which time points data are simulated.</dd>

 <dt>nsize</dt>
<dd>An integer vector containing sizes of simulated clusters.</dd>

 <dt>ntime</dt>
<dd>Number of time points.</dd>

 <dt>nrep</dt>
<dd>Number of replicates.</dd>

 <dt>skip</dt>
<dd>Not for use.</dd>

 <dt>...</dt>
<dd>Addition arguments for <code>plot</code>.</dd>

</dl>

plotSimulation: Plotting Data Simulated Under A Random-Effects Mixture Model

Description

Usage

Value

Arguments

Author

References

See Also

Examples