VolcanoPlot

Plotting differentially expressed genes (DEGs) in a particular
 cluster. Volcano plots are used to readily show the DEGs by plotting
 significance versus fold-change on the y and x axes, respectively.

An open, multi-algorithmic pipeline for easy, fast and efficient
analysis of cellular sub-populations and the molecular signatures that
characterize them. The pipeline consists of four successive steps: data
pre-processing, cellular clustering with pseudo-temporal ordering, defining
differential expressed genes and biomarker identification. More details on
Ghannoum et. al. (2021) <doi:10.3390/ijms22031399>. This package implements
extensions of the work published by Ghannoum et. al. (2019)
<doi:10.1101/700989>.

Waldir Leoncio

DIscBIO

A User-Friendly Pipeline for Biomarker Discovery in Single-Cell
Transcriptomics

Salim Ghannoum

Alvaro Köhn-Luque

Damiano Fantini

VolcanoPlot function

<dl><dt>object</dt>
<dd>A data frame showing the differentially expressed genes (DEGs)
in a particular cluster</dd>
<dt>value</dt>
<dd>A numeric value of the false discovery rate. Default is 0.05..
Default is 0.05</dd>
<dt>name</dt>
<dd>A string vector showing the name to be used on the plot title</dd>
<dt>fc</dt>
<dd>A numeric value of the fold change. Default is 0.5.</dd>
<dt>FS</dt>
<dd>A numeric value of the font size. Default is 0.4.</dd></dl>

Arguments

Volcano Plot — VolcanoPlot

<dl>

<dt>object</dt>
<dd>A data frame showing the differentially expressed genes (DEGs)
in a particular cluster</dd>


<dt>value</dt>
<dd>A numeric value of the false discovery rate. Default is 0.05..
Default is 0.05</dd>


<dt>name</dt>
<dd>A string vector showing the name to be used on the plot title</dd>


<dt>fc</dt>
<dd>A numeric value of the fold change. Default is 0.5.</dd>


<dt>FS</dt>
<dd>A numeric value of the font size. Default is 0.4.</dd>

</dl>

VolcanoPlot: Volcano Plot

Description

Usage

Value

Arguments