as.DISCBIO

Initialize a DISCBIO-class object starting from a
SingleCellExperiment object or a Seurat object

An open, multi-algorithmic pipeline for easy, fast and efficient
analysis of cellular sub-populations and the molecular signatures that
characterize them. The pipeline consists of four successive steps: data
pre-processing, cellular clustering with pseudo-temporal ordering, defining
differential expressed genes and biomarker identification. More details on
Ghannoum et. al. (2021) <doi:10.3390/ijms22031399>. This package implements
extensions of the work published by Ghannoum et. al. (2019)
<doi:10.1101/700989>.

Waldir Leoncio

DIscBIO

A User-Friendly Pipeline for Biomarker Discovery in Single-Cell
Transcriptomics

Salim Ghannoum

Alvaro Köhn-Luque

Damiano Fantini

as.DISCBIO function

<dl><dt>x</dt>
<dd>an object of class Seurat or SingleCellExperiment</dd>
<dt>...</dt>
<dd>additional parameters to pass to the function</dd></dl>

Arguments

Convert Single Cell Data Objects to DISCBIO. — as.DISCBIO

<dl>

<dt>x</dt>
<dd>an object of class Seurat or SingleCellExperiment</dd>


<dt>...</dt>
<dd>additional parameters to pass to the function</dd>

</dl>

as.DISCBIO: Convert Single Cell Data Objects to DISCBIO.

Description

Usage

Value

Arguments

Details