retrieveURL

An open, multi-algorithmic pipeline for easy, fast and efficient
analysis of cellular sub-populations and the molecular signatures that
characterize them. The pipeline consists of four successive steps: data
pre-processing, cellular clustering with pseudo-temporal ordering, defining
differential expressed genes and biomarker identification. More details on
Ghannoum et. al. (2021) <doi:10.3390/ijms22031399>. This package implements
extensions of the work published by Ghannoum et. al. (2019)
<doi:10.1101/700989>.

Waldir Leoncio

DIscBIO

A User-Friendly Pipeline for Biomarker Discovery in Single-Cell
Transcriptomics

Salim Ghannoum

Alvaro Köhn-Luque

Damiano Fantini

retrieveURL function

<dl><dt>data</dt>
<dd>A gene list</dd>
<dt>species</dt>
<dd>The taxonomy name/id. Default is "9606" for Homo sapiens</dd>
<dt>outputFormat</dt>
<dd>format of the output. Can be "highres_image", "tsv",
"json", "tsv-no-header", "xml"</dd>
<dt>maxRetries</dt>
<dd>maximum number of attempts to connect to the STRING api.</dd>
<dt>successCode</dt>
<dd>Status code number that represents success</dd></dl>

Arguments

Author

Retries a URL — retrieveURL

<dl>

<dt>data</dt>
<dd>A gene list</dd>


<dt>species</dt>
<dd>The taxonomy name/id. Default is "9606" for Homo sapiens</dd>


<dt>outputFormat</dt>
<dd>format of the output. Can be "highres_image", "tsv",
"json", "tsv-no-header", "xml"</dd>


<dt>maxRetries</dt>
<dd>maximum number of attempts to connect to the STRING api.</dd>


<dt>successCode</dt>
<dd>Status code number that represents success</dd>

</dl>

Retries a URL

retrieveURL: Retries a URL

Description

Usage

Value

Arguments

Author