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DMRcate (version 1.8.6)

Methylation array and sequencing spatial analysis methods

Description

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulphite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

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Version

Version

1.8.6

License

file LICENSE

Maintainer

Last Published

February 15th, 2017

Functions in DMRcate (1.8.6)

dmrcate

DMR identification
extractRanges

DMRcate-internal

Internal DMRcate objects and functions
DMRcate-package

DMR calling from bisulphite sequencing and Illumina array data
rmSNPandCH

Filter probes
cpg.annotate

Annotate CpGs with their chromosome position and test statistic
DMR.plot

Plotting DMRs