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DNABarcodes (version 1.2.2)

A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments

Description

The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.

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Version

Version

1.2.2

License

GPL-2

Maintainer

Tilo Buschmann

Last Published

February 15th, 2017

Functions in DNABarcodes (1.2.2)

demultiplex

Demultiplex a set of reads.
DNABarcodes-package

Create and analyse DNA barcode sets that are capable of error correction.
create.pool

Create a pool of barcode candidates.
analyse.barcodes

Analyse Sets of Barcode
distance

Calculate distance between two barcodes.
barcode.set.distances

Calculate distances between each barcode pair of a barcode set.
supplierSet

Mock Set of DNA Barcodes
create.dnabarcodes

Create a set of DNA barcodes using one of several heuristic methods.
mutatedReads

Mock Set of Mutated Reads