mutatedReads


The mock set of mutated reads consists of DNA barcodes from the
<code>supplierSet</code> dataset concatenated with random DNA bases. Each read has
been mutated to a certain degree (i.e., single bases have been substituted).<p></p><p>The set is only intended for the man page examples.
</p>

datasets

The package offers a function to create DNA barcode sets
capable of correcting insertion, deletion, and substitution
errors. Existing barcodes can be analysed regarding their
minimal, maximal and average distances between barcodes.
Finally, reads that start with a (possibly mutated) barcode can
be demultiplexed, i.e., assigned to their original reference
barcode.

Tilo Buschmann

DNABarcodes

A tool for creating and analysing DNA barcodes used in Next
Generation Sequencing multiplexing experiments

mutatedReads function

A character vector of 10,000 DNA sequences.

Format

The mock set of mutated reads consists of DNA barcodes from the
<code>supplierSet</code> dataset concatenated with random DNA bases. Each read has
been mutated to a certain degree (i.e., single bases have been substituted).

The set is only intended for the man page examples.

mutatedReads: Mock Set of Mutated Reads

Description

Arguments

Format