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DNAcopy (version 1.46.0)

DNA copy number data analysis

Description

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

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Version

Version

1.46.0

License

GPL (>= 2)

Maintainer

Venkatraman E Seshan

Last Published

February 15th, 2017

Functions in DNAcopy (1.46.0)

coriell

Array CGH data set of Coriell cell lines
plot.DNAcopy

Plot the data and results from segment of a CNA object
segments.p

p-values for the change-points
getbdry

Sequential stopping boundary
smooth.CNA

Smooth a `Copy Number Array' data object
exon.segment

Binary segmentation of exon data.
subset.DNAcopy

Subset a DNAcopy data object
DNAcopy

Results of segmenting a CNA data object
segment

Genome Segmentation Program
segments.summary

Additional summary measured for the segments
CNA

Create `Copy Number Array' data object
subset.CNA

Subset a `Copy Number Array' data object
glFrequency

Additional summary measured for the segments
DNAcopy-internal

Internal DNAcopy functions
zoomIntoRegion

Zoomed in view of genomic region
plotSample

Plot the data and results from segmentation for a single sample
cytoBand

Cytogenic band data