changepoints(genomdat, data.type = "logratio", alpha = 0.01, weights = NULL, sbdry, sbn, nperm = 10000, p.method="hybrid", min.width=2, kmax=25, nmin = 200, trimmed.SD = NULL, undo.splits = "none", undo.prune = 0.05, undo.SD = 3, verbose = 1, ngrid=100, tol=1e-6)
changepoints.prune(genomdat, lseg, change.cutoff=0.05)
changepoints.sdundo(genomdat, lseg, trimmed.SD, change.SD=3)
trimmed.variance(genomdat, trim=0.025)
inflfact(trim)
exon.changepoint(exondat, ngrid=100, tol=1e-6)