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DynClust (version 3.24)

Denoising and Clustering for Dynamical Image Sequence (2D or 3D)+t

Description

A two-stage procedure for the denoising and clustering of stack of noisy images acquired over time. Clustering only assumes that the data contain an unknown but small number of dynamic features. The method first denoises the signals using local spatial and full temporal information. The clustering step uses the previous output to aggregate voxels based on the knowledge of their spatial neighborhood. Both steps use a single keytool based on the statistical comparison of the difference of two signals with the null signal. No assumption is therefore required on the shape of the signals. The data are assumed to be normally distributed (or at least follow a symmetric distribution) with a known constant variance. Working pixelwise, the method can be time-consuming depending on the size of the data-array but harnesses the power of multicore cpus.

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Version

Install

install.packages('DynClust')

Monthly Downloads

306

Version

3.24

License

MIT + file LICENSE

Maintainer

Last Published

April 11th, 2022

Functions in DynClust (3.24)

GetDenoisingResults

Get denoising step result
DynClust-package

Denoising and clustering for dynamical image sequence (2D or 3D)+T
GetClusteringResults

Get clustering step result
adu340_4small

Calcium-imaging dataset using Fura-2
RunDenoising

Denoising step of a dynamical image sequence
RunClustering

Clustering of a dynamical image sequence
MultiTestH0

Statistical test of zero mean for dynamics