chkp

chkp,binClst-method

Plots the labeling profile of a
 binClst_instance against a control variable (e.g. environmental
 information) depicted as background coloured bars.

Unsupervised, multivariate, binary clustering for meaningful annotation of data, taking into account the uncertainty in the data. A specific constructor for trajectory analysis in movement ecology yields behavioural annotation of trajectories based on estimated local measures of velocity and turning angle, eventually with solar position covariate as a daytime indicator, ("Expectation-Maximization Binary Clustering for Behavioural Annotation").

Joan Garriga

EMbC

Expectation-Maximization Binary Clustering

chkp function

<dl><dt>obj</dt>
<dd>A binClst_instance.</dd>
<dt>...</dt>
<dd>Parameters <code>ctrLbls</code>, <code>ctrlClrs</code>, <code>ctrlLgnd</code> and
<code>lims</code> are optional.</dd>
<dt>ctrlLbls</dt>
<dd>A numeric vector with the control labels or a string
specifying one of 'height', 'azimuth' or 'both' solar covariates. By
default, for a binClstPath_instance it is set to the solar height
covariate, regardless it has been used or not for the clustering.</dd>
<dt>ctrlClrs</dt>
<dd>A vector of colors to depict the control labeling. At least
one colour should be specified for each different control label. By default
white/grey colours are used for the default control labels.</dd>
<dt>ctrlLgnd</dt>
<dd>A vector of strings identifying the labels for the legend of
the plot. They are automatically generated for the solar covariates.</dd>
<dt>lims</dt>
<dd>A numeric vector with lower and upper bounds to limit the plot.</dd></dl>

Arguments

Check labeling profile — chkp

<dl>

<dt>obj</dt>
<dd>A binClst_instance.</dd>


<dt>...</dt>
<dd>Parameters <code>ctrLbls</code>, <code>ctrlClrs</code>, <code>ctrlLgnd</code> and
<code>lims</code> are optional.</dd>


<dt>ctrlLbls</dt>
<dd>A numeric vector with the control labels or a string
specifying one of 'height', 'azimuth' or 'both' solar covariates. By
default, for a binClstPath_instance it is set to the solar height
covariate, regardless it has been used or not for the clustering.</dd>


<dt>ctrlClrs</dt>
<dd>A vector of colors to depict the control labeling. At least
one colour should be specified for each different control label. By default
white/grey colours are used for the default control labels.</dd>


<dt>ctrlLgnd</dt>
<dd>A vector of strings identifying the labels for the legend of
the plot. They are automatically generated for the solar covariates.</dd>


<dt>lims</dt>
<dd>A numeric vector with lower and upper bounds to limit the plot.</dd>

</dl>

chkp: Check labeling profile

Description

Usage

Arguments

Examples