download.kegg.pathways


        Organism in KEGG three letter code, 
        e.g. &#145;hsa&#146; for &#145;homo sapiens&#146;.
    


        Output directory. 
        If not null, pathways are written to files in the specified directory.  
    

out.dir


        Logical.
        In case pathways are written to file (&#145;out.dir&#146; is not null): 
        should output files be zipped? 
    


    The function downloads all metabolic and non-metabolic pathways in
    KEGG XML format for a specified organism.


The EnrichmentBrowser package implements essential functionality
for the enrichment analysis of gene expression data. The analysis combines
the advantages of set-based and network-based enrichment analysis in order
to derive high-confidence gene sets and biological pathways that are
differentially regulated in the expression data under investigation.
Besides, the package facilitates the visualization and exploration of such
sets and pathways.

Ludwig Geistlinger

EnrichmentBrowser

Seamless navigation through combined results of set-based and
network-based enrichment analysis

download.kegg.pathways function

Organism in KEGG three letter code, 
        e.g. <sQuote>hsa</sQuote> for <sQuote>homo sapiens</sQuote>.

Output directory. 
        If not null, pathways are written to files in the specified directory.

Logical.
        In case pathways are written to file (<sQuote>out.dir</sQuote> is not null): 
        should output files be zipped?

The function downloads all metabolic and non-metabolic pathways in
    KEGG XML format for a specified organism.

download.kegg.pathways: Download of KEGG pathways for a particular organism

Description

Usage

Arguments

Value

See Also

Examples