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EpiEstim (version 1.1-2)

EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.

Description

This package provides tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence.

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Version

Install

install.packages('EpiEstim')

Monthly Downloads

965

Version

1.1-2

License

GPL (>= 2)

Maintainer

Anne Cori

Last Published

March 8th, 2013

Functions in EpiEstim (1.1-2)

EpiEstim-package

The EpiEstim package
SARS2003

Data on the 2003 SARS epidemic in Hong Kong
Flu1918

Data on the 1918 H1N1 influenza pandemic in Baltimore
EstimateR

Estimation of the instantaneous reproduction number
Flu2009

Data on the 2009 H1N1 influenza pandemic in a school in Pennsylvania
DiscrSI

Discretized Generation Time Distribution Assuming A Shifted Gamma Distribution
OverallInfectivity

Overall Infectivity Due To Previously Infected Individuals
WT

Estimation of the case reproduction number using the Wallinga and Teunis method
Smallpox1972

Data on the 1972 smallpox epidemic in Kosovo
Measles1861

Data on the 1861 measles epidemic in Hagelloch, Germany