AffyBatch object using a
GAL or CDF annotation environment and generates an ExpressionSet object
containing the results.
summarize.miR(abatch,
pmcorrect.method='pmonly',
pmcorrect.param=list(),
summary.method='medianpolish',
summary.param=list(),
summary.subset=NULL)AffyBatch object.
AffyBatch object. Running NormiR.pmcorrect.methods(abatch) indicates
which other methods can be chosen instead of the default one pmonly.
R list of optional parameters for the selected pmcorrect.method, as specified
in the documentation of the original function pmcorrect function of the affy package.
NormiR.summary.methods() indicates which other methods can be chosen instead
of the default one medianpolish.
R list of optional parameters for the selected summary.method, as specified
in the documentation of the original AffyBatch method computeExprSet contained in
the affy package.
R list of probe set identifiers. When left to its default NULL value, the
summarized expression values are computed for all probe sets available on the array.
ExpressionSet containing the summarized expression data.
NormiR.pmcorrect.methods,
NormiR.summary.methods,
NormiR.
data(galenv)
data(GSE20122)
eset <- summarize.miR(GSE20122,
summary.method="medianpolish")
Run the code above in your browser using DataLab