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FCSlib (version 1.3.0)

A Collection of Fluorescence Fluctuation Spectroscopy Analysis Methods

Description

This is a package for fluorescence fluctuation spectroscopy data analysis methods such as spFCS, FCCS, scanning-FCS, pCF, N&B and pCOMB, among others. In addition, several data detrending tools are provided. For an extensive user's guide for the use of FCSlib, please navigate to (). Sample data can be found at (). The original paper where this package is presented can be found at ().

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Version

Install

install.packages('FCSlib')

Monthly Downloads

84

Version

1.3.0

License

GPL-3

Maintainer

Rac3<ba>l C<c3><a1>mara

Last Published

November 18th, 2020

Functions in FCSlib (1.3.0)

gcf

General Correlation Function
nbline

Number & Brightness (Single Image)
detrendTimeSeries

Algorithms for data detrending
fitFCS

Fitting FCS Data
binMatrix

Binned representation of a matrix
fcs

Fluorescence Correlation Spectroscopy
Cy5

Experimental data of freely diffusing Cy5 dye in water at a concentration of 33 nM.
asynACTCSPC

Asynchronous Autocorrelation of Time-Correlated Single-Photon Counting
binTimeSeries

Binned representation of a time series
norm.vector

Min-Max Feature scaling normalization
pcf

Pair Correlation Function
readFileSPC

Read File SPC-140/150/130/830
readFileModel

Read File Model
writeFileTiff

Write File Tiff
pcomb

Pair Correlation of Molecular Brightness
readFileFCS

Read File FCS
V2

Line-scan data of HEK-293 cells expressing Venus (EYFP) dimers
smoothCarpet

Smooth Carpet (Single Image)
tiff_to_mtx

Transformation of multiple-image TIFF files or arrays into a matrix
readFileTiff

Read File Tiff
simplifyFCS

Simplify FCS