genes

 
The dataset is a small subset of all human genes available in the RefSeq database. The gene annotations require the exon annotations along with the reads files.

 datasets

Some functions for modeling sequence read counts as a
generalized poisson model and to use this model for detecting
differentially expressed genes in different conditions and
differentially spliced exons.

Sudeep Srivastava

GPseq

gpseq: Using the generalized Poisson distribution to model
sequence read counts from high throughput sequencing
experiments

genes function

The genes data is a (num_genes x 4) matrix where num_genes is the total number of uniquely annotated genes. Column 1 is the gene ID, column 2 is the starting exon and column 3 is the ending exon in the gene. If Column 2 = 1 and Column 3 = 4, then exons 1,2,3 and 4 are inside the gene. Column 4 is the gene length.num_genes = 2

genes: Gene annotations

Description

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