Learn R Programming

HDSpatialScan (version 1.0.4)

Multivariate and Functional Spatial Scan Statistics

Description

Allows to detect spatial clusters of abnormal values on multivariate or functional data. Martin KULLDORFF and Lan HUANG and Kevin KONTY (2009) , Inkyung JUNG and Ho Jin CHO (2015) , Lionel CUCALA and Michael GENIN and Caroline LANIER and Florent OCCELLI (2017) , Lionel CUCALA and Michael GENIN and Florent OCCELLI and Julien SOULA (2019) , Camille FREVENT and Mohamed-Salem AHMED and Matthieu MARBAC and Michael GENIN (2021) , Zaineb SMIDA and Lionel CUCALA and Ali GANNOUN and Ghislain Durif (2022) , Camille FREVENT and Mohamed-Salem AHMED and Sophie DABO-NIANG and Michael GENIN (2023) .

Copy Link

Version

Install

install.packages('HDSpatialScan')

Monthly Downloads

281

Version

1.0.4

License

GPL-3

Maintainer

Camille FREVENT

Last Published

May 25th, 2023

Functions in HDSpatialScan (1.0.4)

DFFSS scan procedure

ResScanOutputMultiFunct

Constructor function for objects of the ResScanOutputMultiFunct class

ResScanOutputMulti

Constructor function for objects of the ResScanOutputMulti class

Univariate functional data

Spatial object corresponding to the sites of the data of the package HDSpatialScan

MNP scan procedure

Initalization of the scan procedures by creating the matrix of potential clusters

HDSpatialScan-package

Multivariate and Functional Spatial Scan Statistics

plotSummary.ResScanOutputMulti

Plots the mean or median spider chart of the clusters detected by a multivariate scan function (MG or MNP)

plotSummary.ResScanOutputMultiFunct

Plots the mean or median curves in the clusters detected by a multivariate functional scan procedure (MPFSS, NPFSS, MDFFSS or MRBFSS)

Map of the clusters

dfree_index_multi

Index for the MDFFSS scan procedure

MPFSS scan procedure

PFSS scan procedure

Schema of the clusters

multi_signs_matrix

List of matrix of signs (multivariate functional data)

Return only the detected clusters with no overlapping in their order of detection

Multivariate functional data

plotSummary.ResScanOutputUniFunct

Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)

Constructor function for objects of the ResScanOutput class

Generic function to plot curves

uni_signs_matrix

Computation of the matrix of signs

Index for the NPFSS scan procedure (univariate functional case)

Map of circular clusters

Index for the UNP scan procedure

plotCurves.ResScanOutputMultiFunct

Plots the curves in the clusters detected by the multivariate functional scan functions (MPFSS, NPFSS, MDFFSS or MRBFSS)

MRBFSS scan procedure

NPFSS scan procedure (univariate functional or multivariate functional)

Spatial scan procedure

UG scan procedure

ResScanOutputUni

Constructor function for objects of the ResScanOutputUni class

MDFFSS scan procedure

Index for the UG scan procedure

Creation of the matrix of potential clusters

pointwise_dfree

Index for the DFFSS scan procedure

ResScanOutputUniFunct

Constructor function for objects of the ResScanOutputUniFunct class

pointwise_wmw_multi

Index for the MRBFSS scan procedure

Index for the MNP scan procedure

MG scan procedure

Multivariate non-functional data

summary.ResScanOutputUni

Summary of the clusters obtained with a univariate scan function (UG or UNP).

summary.ResScanOutputMultiFunct

Summary of the clusters obtained with a multivariate functional scan function (MPFSS, NPFSS, MDFFSS or MRBFSS).

UNP scan procedure

URBFSS scan procedure

Index for the NPFSS scan procedure (multivariate functional case)

Index for the MG scan procedure

Generic function to plot a summary

plotCurves.ResScanOutputUniFunct

Plots the curves in the clusters detected by the univariate functional scan functions (PFSS, NPFSS, DFFSS or URBFSS)

pointwise_wmw_uni

Index for the URBFSS scan procedure

A posteriori filtering on the area

Permutates the data

plot.ResScanOutput

Schema or map of the clusters

post_filt_nb_sites

A posteriori filtering on the number of sites/individuals

summary.ResScanOutputMulti

Summary of the clusters obtained with a multivariate scan function (MG or MNP).

print.ResScanOutput

Prints a result of a scan procedure

Computation of the multivariate functional ranks

post_filt_radius

A posteriori filtering on the radius

summary.ResScanOutputUniFunct

Summary of the clusters obtained with a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS).

Finalization of the scan procedures