INSPEcT (version 1.2.2)

ratesFirstGuessVar: Retrieve pre-modeling rates and concentrations variance

Description

Retrieve pre-modeling rates and concentrations variance

This method allow to access to the estimated variance of synthesis rates and pre mRNA and total mRNA concentrations the way they were calculated by the constructor function newINSPEcT.

Usage

ratesFirstGuessVar(object, feature)
"ratesFirstGuessVar"(object, feature)

Arguments

object

An object of class INSPEcT

feature

A character indicating the feature to retireve, "synthesis", "degradation", "processing" for rates, "total" for total mRNA concentrations or "preMRNA" for premature mRNA concentrations

Value

A numeric vector containing the values for the selected feature

See Also

newINSPEcT, ratesFirstGuess

Examples

data('rpkms', package='INSPEcT')
tpts <- c(0, 1/6, 1/3, 1/2, 1, 2, 4, 8, 16)
tL <- 1/6
mycerIds <- newINSPEcT(tpts, tL, rpkms$foursu_exons, rpkms$total_exons, 
	rpkms$foursu_introns, rpkms$total_introns, BPPARAM=SerialParam())
ratesFirstGuessVar(mycerIds, 'synthesis')