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IntNMF (version 1.3.0)

Integrative Clustering of Multiple Genomic Dataset

Description

Carries out integrative clustering analysis using multiple types of genomic dataset using integrative Non-negative Matrix factorization.

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Version

Install

install.packages('IntNMF')

Monthly Downloads

368

Version

1.3.0

License

GPL-2

Maintainer

Prabhakar Chalise

Last Published

January 8th, 2025

Functions in IntNMF (1.3.0)

nmf.opt.k

Selection of optimum number of clusters (k)
ClusterEntropy

A function to measure cluster entropy
nmf.mnnals

Nonnegative Matrix Factorization of Multiple data using Nonnegative Alternating Least Square
ClusterPurity

A function to measure cluster purity
SilhouettePlot

A function to plot silhouette width
ConsensusMatPlot

A function to create image plot of the consensus matrix