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LDtests (version 1.0)

HWE2sided: P-values for three different tests of HWE

Description

Calculates conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions, the Haldane 2-sided test as implemented by Wiggington et al (2005) and the 1-sided test for inbreeding.

Usage

HWE2sided(geno, qplot = F, title = NULL)

Arguments

geno
Vector of genotype counts: no. heterozygotes followed by the nos. homozygotes
qplot
If qplot is true the distribution of the null hypothesis is plotted
title
Title for the plot

Value

pval.cond
Conditional p-value
pval.H
2-sided Haldane p-value
pval.inbreed
1-sided test for inbreeding

Details

References

Kulinskaya and Lewin 2008

See Also

HWE2sided.table

Examples

Run this code
geno <- c(20,73,7)
HWE2sided(geno)

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