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LDtests (version 1.0)

Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium

Description

Exact tests for Linkage Disequilibrium (LD) and Hardy-Weinberg Equilibrium (HWE). - 2-sided LD tests based on different measures of LD (Kulinskaya and Lewin 2008) - 1-sided Fisher's exact test for LD - 2-sided Haldane test for HWE (Wiggington 2005) - 1-sided test for inbreeding - conditional p-values proposed in Kulinskaya (2008) to overcome the problems of asymetric distributions (for both LD and HWE)

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Version

Install

install.packages('LDtests')

Monthly Downloads

7

Version

1.0

License

GPL

Maintainer

Alex Lewin

Last Published

February 15th, 2017

Functions in LDtests (1.0)

LD2sided.pvals

P-values and Linkage Disequilibrium measures for several tests of Linkage Disequilibrium
Fisher1sided

1-sided Fisher's test of linkage disequilibrium
HWE2sided.table

Table and plot of Hardy-Weinberg p-values for all 2x2 tables possible under the null distribution.
LDtests-package

Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
HWE2sided

P-values for three different tests of HWE
LD2sided.tables

Tables of p-values and Linkage Disequilibrium measures for all 2x2 tables possible under the null distribution.