LDtests (version 1.0)

LD2sided.tables: Tables of p-values and Linkage Disequilibrium measures for all 2x2 tables possible under the null distribution.

Description

This function calculates p-values and Linkage Disequilibrium measures for all possible 2x2 contingency tables consistent with the margins of the input observed contingency table. See LD2sided.pvals for details of the Linkage Disequilibrium measures and tests used.

Usage

LD2sided.tables(ctable)

Arguments

ctable

Vector of the 4 entries in the 2x2 contingency table

Value

Outputs the table of LD p-values for all the contingency tables consistent with the margins of the input table.

Details

This function prints out three tables. First lists all contingency tables consistent with the margins of the input table. Second lists the orderings of the contingency tables according to the different LD measures. Third gives the different LD p-values for all the contingency tables.

References

Kulinskaya and Lewin 2008

See Also

LD2sided.pvals

Examples

ctable <- c(0,9,5,16)
LD2sided.tables(ctable)
LD2sided.pvals(ctable)$pval.Fish