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MCPAN (version 1.1-21)

Multiple Comparisons Using Normal Approximation

Description

Multiple contrast tests and simultaneous confidence intervals based on normal approximation. With implementations for binomial proportions in a 2xk setting (risk difference and odds ratio), poly-3-adjusted tumour rates, biodiversity indices (multinomial data) and expected values under lognormal assumption. Approximative power calculation for multiple contrast tests of binomial and Gaussian data.

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Version

Install

install.packages('MCPAN')

Monthly Downloads

452

Version

1.1-21

License

GPL-2

Maintainer

Frank Schaarschmidt

Last Published

March 22nd, 2018

Functions in MCPAN (1.1-21)

Simpson

Calculate the Simpson index
Waldtest

Simultaneous Wald tests
MCPAN-package

Multiple comparison procedures based on normal approximation and extensions.
Simpsonci

Confidence intervals for differences of Simpson indices
Waldci

Simultaneous Wald confidence intervals
SCSrank

Compute a rectangular simultaneous confidence set from a sample of a joint empirical distribution.
Shannon

Shannon index
PQln

Generalized pivotal quantity for log expected values of several lognormal samples.
Shannonci

Confidence intervals for multiple contrasts of Shannon indices
HCD

Hell Creek Dinosaur Data
corrMatgen

A function to calculate the correlation matrix
binomRRci

Simultaneous confidence intervals for ratios of independent binomial proportions
estShannon

Estimate the Shannon Index
censsamplef

Random data for Poly-k
censsample

Random data for Poly-k
binomRDtest

Simultaneous test for contrasts of independent binomial proportions (in a oneway layout)
binomORci

Simultaneous confidence intervals for odds ratios
binomest

Only for internal use.
bronch

Rodent bronchial carcinoma data
mosaicdiv

Mosaicplot for the data in Shannonci and Simpsonci
estSimpson

Simpson index
liarozole

Marked improvement of psoriasis after application of liarozole
lnrci

Simultaneous confidence intervals for expected values assuming lognormal distribution.
estShannonf

Estimate the Shannon-Wiener index
binomRDci

Simultaneous confidence intervals for contrasts of independent binomial proportions (in a oneway layout)
methyl

NTP bioassay data: effect of methyleugenol on skin fibroma
multinomORci

Simultaneous confidence intervals for odds ratios comparing multiple odds and multiple treatments in a contingency table
lndest

Point and varioance estimates for expected and log(expected values) of lognormal samples
plot.sci

Plot confidence intervals
plotCI

Plot confidence intervals
powerbinom

Approximate power for multiple contrast tests of binomial proportions.
powermcpn

Approximative power calculation for multiple contrast tests
estSimpsonf

Estimate the Simpson index from several samples
poly3est

Only for internal use.
poly3ci

Simultaneous confidence intervals for contrasts of poly-3-adjusted tumour rates
poly3test

Approximate simultaneous test for poly-3-adjusted tumour rates
plotCII

Plot confidence intervals
summary.Simpsonci

Summary function for Simpsonci
powermcpt

Testversion. Power calculation for multiple contrast tests (1-way ANOVA model)
poly3estf

Only for internal use.
summary.binomRDci

Detailed print out for binomRDci
summary.binomORci

Detailed print out for binomORci
scalechoice

Only for internal use.
poly3table

Summarize long term carcinogenicity data
summary.binomRDtest

Detailed print out for binomRDtest
summary.Shannonci

Summary for Shannonci
summary.binomRRci

Detailed print out for binomRRci
print.multinomORci

Print out put of multinomORci
summary.poly3est

Detailed print out for poly3est
printfunctions

Print methods for the classes in this package