C_TAB_sim

<p>A matrix of simulated counts corresponding to 100 CpGs and 2 samples.
True proportions of methylation, hydroxymethylation and unmethylated
used in the simulation are .3, .2, and .5, respectively.</p>

datasets

Maximum likelihood estimates (MLE) of the proportions
of 5-mC and 5-hmC in the DNA using information from BS-conversion,
TAB-conversion, and oxBS-conversion methods. One can use information from all three methods
or any combination of two of them. Estimates are based on Binomial model by
Qu et al. (2013) <doi:10.1093/bioinformatics/btt459> and
Kiihl et al. (2019) <doi:10.1515/sagmb-2018-0031>.

Samara Kiihl

MLML2R

Maximum Likelihood Estimation of DNA Methylation and
Hydroxymethylation Proportions

C_TAB_sim function

<p>100 x 2 matrix (CpGs in the rows and  Samples in the columns).</p>

C_TAB_sim: C (unconverted) counts from TAB

Description

Usage

Arguments

Format