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NTW (version 1.22.0)

Predict gene network using an Ordinary Differential Equation (ODE) based method

Description

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.

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Version

Version

1.22.0

License

GPL-2

Maintainer

Yuanhua Liu

Last Published

February 15th, 2017

Functions in NTW (1.22.0)

NTW

Estimation of gene interaction matrix A and perturbation targets matrix P
sos.data

SOS pathway perturbation data
AP.estimation.Srow

Estimation of a single row in gene interaction matrix A and perturbation targets matrix P
methods.regression

Regression methods to estimate a single row in A with fixed perturbations
A.estimation.Srow

Estimation of a single row in matrix A with the perturbation targets matrix P known
patterns.priorA

Approaches to use a priori known gene association information for a single row estimation in matrix A
P.preestimation

Pre-estimation of the transcriptional pertubation targets matrix P
NTW-package

Gene interaction network and perturbation targets predictions
comb.matrix

Create all combinations of vectors