NetRep (version 1.2.7)

Permutation Testing Network Module Preservation Across Datasets

Description

Functions for assessing the replication/preservation of a network module's topology across datasets through permutation testing; Ritchie et al. (2015) .

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Version

Install

install.packages('NetRep')

Monthly Downloads

380

Version

1.2.7

License

GPL-2

Maintainer

Scott Ritchie

Last Published

August 19th, 2023

Functions in NetRep (1.2.7)

The 'disk.matrix' class

example-data

Example data

modulePreservation

Replication and preservation of network modules across datasets

networkProperties

Calculate the topological properties for a network module

simplify_param

Template parameters

permutationTest

Permutation test P-values for module preservation statistics

NetRep

Fast permutation procedure for testing network module replication

requiredPerms

How many permutations do I need to test at my desired significance level?

load.bigMatrix

Load a 'bigMatrix' (deprecated)

plotTopology

Plot a topological feature of network module

sampleOrder

Order samples within a network.

plot_params

Template parameters

plotModule

Plot the topology of a network module

combineAnalyses

Combine results of multiple permutation procedures

nodeOrder

Order nodes in descending order of weighted degree and order modules by the similarity of their summary vectors.