ORIClust is a user-friendly R-based software package for gene clustering. Clusters are given by genes matched to prespecified profiles across various ordered treatment groups. It is particularly useful for analyzing data obtained from short time-course or dose-response microarray experiments.
| Package: | ORIClust |
| Type: | Package |
| Version: | 1.0 |
| Date: | 2009-05-24 |
| License: | GPL-2 |
| LazyLoad: | yes |
The main functions are ORICC1 and ORICC2, see the documentation files with examples.
Liu, T., Lin, N., Shi, N. and Zhang, B. (2009), Information criterion-based clustering with order-restricted candidate profiles in short time-course microarray experiments, BMC Bioinformatics, 10: 146.